Molecular Dynamics Simulations of Carbon Nanotube Based Gears

Jie Han and Al Globus, MRJ, Inc., Richard Jaffe, NASA, and Glenn Deardorff, Sterling Software
NASA Ames Research Center, Moffett Field, CA 94035

Contents

Introduction

The unique properties of fullerenes in dimension and topology allows one to design various nano devices and molecular machinary parts. Fig. 1 illustates a carbon nanotube based gear. Shafts are multiwalled carbon nanotubes and gear teeth are benzyne molecules bonded onto the nanotube.


Fig. 1: A carbon nanotube based gear (click on image for larger view)

Compared to the diamonoid molecular planetary gear designed by Drexler and Merkel (1995), and Robertson's fullerene based nanogear (1995), the nanotube based gears shown in Fig. 1 are much simpler in structure and may be synthetically accessible.

The idea of carbon nanotube based gears comes from recent progress in fullerene science and technology. Multi-walled and single-walled nanotubes have been successfully prepared and rapid advance has been made in controlling tube diameter, length, chirality and the number of concentric shells [Thess 96]. Carbon nanotubes have many attractive material properties. For example, experiment and theory have demonstrated that nanotubes have exceptionally high Young's modulus and nanotube electronic properties vary as a function of diameter and chirality [Ebbesen 96]. These properties have opened doors to electronic, optical, magnetic and mechanical applications. It has been shown that nanotubes can be used as atomic-scale field emitters [Rinzler 95], electronic switches [Service 96], and pinning materials in high-Tc superconductors [Ebbesen 96]. In addition, the functionality of fullerene materials provides opportunities for fabrication of novel nanodevices. Filled nanotubes leading to improved catalysts and biosensors are being devoloped [Freemantle 96] and monoadducts and multiple adducts on C60 are finding applications [Diederich 96]. Therefore, it may be possible to make nanotube based molecular gears by bonding rigid molecules onto nanotubes to form gears with molecular teeth. It may be practical to position molecular teeth in atomically precise positions required for gear design by, say, scanning tunnel microscopy (STM) techniques. Recently, IBM Scientists [Jung 96] have succeeded in positioning individual molecules at room temperature by purely mechanical means. They used extremely fine tip of STM to position organic molecules having a total of 173 atoms and a diameter of 1.5 nm. We are also investigating routes to chemical synthesis of these gears.

Our extensive quantum chemical calculations and molecular simulations support the chemically feasibility of nanotube based gears [Jaffe 96a]. A simple approach is to bond rigid planar benzyne molecules onto a nanotube. The calculations are in agreement with experiment for napthylene and buckyballs (C60) while experimental verification using nanotubes has not been reported [Jaffe 96a]. This paper will demonstrate these processes to form nanotube based gears and evaluate the gears via molecular dynamics simulation. By studying the rotational dynamics of gears under various conditions, we will determine favorable gear working conditions and charaterize gear performance.

Simulation Details

We have chosen Brenner's potential to describe bonded interactions [Brenner 90]. This potential realistically describes bonding structure and properties in graphite, diamond materials and small hydrocarbon molecules. In addition, its proper description of bond forming and breaking can be used to observe reactive collision to bond benzyne onto fullerenes and, also, potential molecular gear failure modes. For intermolecular interactions between different gear atoms, we used and tested several force field potentials: Lennard-Jones (6-12) with parameters derived from fitting graphite and C60 experimental data [Girifalco 92] and the Buckingham (exp+6) plus electrostatic interaction terms derived from benzene dimer energy and structure [Smith 96b]. We carried out molecular mechanics calculations of C60, nanotubes and molecular gears to test these force fields. Minimized energy and C-C bond length are the same as reported values for C60 and nanotubes [Robertson 92]. Energy minimization shows that the nanotube based gears are in stress-relaxed structures, with a slight higher energy than nanotubes (<5%, depending on length). Detailed comparison with quantum chemistry results is given separately [Jaffe 96a].

MD simulations were performed on the energy optimized structures. The equations of motion were integrated using a 4-order predictor-corrector algorithm with a time step of 0.5 fs. The Brendersen's thermostat was used to control the gear's temperature. The rotational velocity components in a total atomic velocity was subtracted for evaluation of the thermodynamic temperature. Angular velocity was measured for each atom and averaged for each gear for each given input angular velocity. Most MD runs were done on NAS's SP2 by a parallel MD algorithm using replicated data.

In simulations of gear rotation, the gears must be kept correctly positioned relative to each other. This is accomplished by constraining the atoms near the end of each tube (usually two rows of rings at each end). In our simulations, a spring model was used to connect the end atoms to a mount and model the interaction between them and massless mount atoms. We call it the "hot end model." In contrast, if end atoms are only allowed to rotate, with no thermal motion, we call this the "cold end model". This model was used by Robertson. These two models can constrain tube end atoms to stay on a cylinder and therefore maintain the relative position of two gears near a constant value. However, the hot end model is more realistic since it considers the effects of interatomic interaction on gear operation.

In addition, one gear must be powered to rotate. Sunny Bains reports in Science, volume 273, 5 July 1996, p. 36 on upcoming experimental papers suggesting that lasers may be used to rotate the end atoms of a molecular gear. A MD simulation study also showed that the rotational motion of the end atoms of one nanotube could be induced by adding charges to the tube ends and applying one or two oscillating laser fields [Tuzun 95]. Thus, we can model the powered gear by giving its tube end atoms an angular velocity. Once the end atoms are driven to rotate, strain between them and neighboring atoms will be induced. In order to release strain, neighboring atoms must rotate with the end atoms. Thus, rotational momentum is transfefred to all other atoms and the gear is powered to rotate because of interatomic interactions. Since such interaction use strong bonded forces, one can expect very effective momentum transfer and very high rotation rate. On the other hand, weak VDW interactions between two gears will cause the the driven gear to rotate. By following the motions of gear atoms, MD simulations with atomistic interaction potential will rotate gears.

Results

Computational Synthesis of Nanotube Based Gears

We start the MD study with a demonstration of synthesis of nanotube based gears and functionalized C60. In simulations, a benzyne molecule was given an initial velocity toward a nanotube (see
Collisions of Benzyne with Nanotubes and Buckyballs). If the velocity was too small, a non-reactive collision was observed that appeared to be elastic. If the velocity was too large, dissociation of benzyne and nanotube was seen when the molecules collided. A reactive collision to bond benzyne onto nanotube occurs if an appropriate initial velocity was given.

Two types of products from MD reactive collisions of benzyne and nanotubes were observed: 1,2 and 1,4 adducts, as shown in Fig. 2 for energy minimized structures. From our calculations of quantum chemistry and molecular mechanics, both 1,4 and 1,2 adducts on nanotube are stable while the 1,4 adduct is of slightly lower energy. In contrast, the 1,2 adduct of C60 was found to be much more stable than the 1,4 adduct, consistent with both experiment and quantum chemistry calculations [Jaffe 96a]. More interestingly, the experiment and calculation of benzyne adducts on planar napthylene molecules showed that the 1,4 adduct is much more stable than the 1,2 adduct. Considering the diameter of the nanotube in the calculations is larger than that of C60 (12 vs. 9 Å), stability of 1,2 or 1,4 adduct may be a function of nanotube diameter. The 1,2 adduct is more stable for smaller diameters (e.g. C60) and less stable for large diameters.

Fig. 2. 1,2 adduct (left) and 1,4 adduct (right) of benzyne on a nanotube.

Reasonable ageement in energy values of these adducts has been found for quantum chemistry and molecular mechanics [Jaffe 96a] but some discrepancy existed for optimized 4-membered ring geometry. The valence angle in 4-membered ring is close to 90° with quantum chemistry but it deviates from normal by about 15° with Brenner's emperical potential. Nevetheless, we believe that Brenner's potential is fairly good since it agrees well with most of the quantum chemistry results.

Experiments suggest that the tube end is either closed (buckyball cap) for [a,0] semiconductive tubes or open (benzyne end) for short [a,a] metallic tubes, in which the [a,b] is the helicity notation for nanotubes [Dresselhaus 96] [Thess 96]. Our preliminary studies showed that the hydrogen terminated [a,0] tube ends could exist in the energy minimized structure at 0 K, but they were highly unstable at room temperature. Our MD studies of gears were not involved in the termination of tube ends since the six-membered rings at the tube ends were treated by spring models.

Rotation Dynamics of Gears in Vacuum

The first gear system is in vacuum, as shown in Fig. 3. The two gears were made of [14,0] nanotubes with a diameter of 11Å. Each nanotube has seven 1,2 benzyne teeth where each pair is separated by two six-membered rings around the nanotube. The number of atoms in these simulations is about 1000 (short tube) and 2000 (long tube). The gears should work well in vacuum since there is no drag to resist their rotation. The problem, however, is that heat generated by friction cannot be removed. The accumulated heat eventually destroys the gears. The maxium temperature in which the gears will work can be found from this case study. Fig. 3 shows rotation dynamics of the short tube gears (see Rotation of Gears in Vaccum).

Fig. 3. Left: the gear model. Middle:rotation rate vs. time; black line-input rate, red line-measured rate based on the powered gear teeth; blue line-measured rate based on the driven gear teeth; Right: gear temperature vs. time

Some observations can be made from Fig. 3. The gears initially were at a minimized energy state at 200K. Powered atom input angular velocity was increased linearly from 0 to 0.2 rpps (revolutions per ps) in the first 10 ps and then stayed at 0.2 rpps to 50 ps. Consequently, the gears started rotation with a linearly increasing rate from 0 to 0.05 rpps. During this period, heat was accumulated and temperature increased from 200K to 600K. The gears worked very well. But, heat resulting from gear atom friction accumulated as the temperature increased to >1000K after 30 ps. At higher temperatures, inputed energy could not be effectively converted into rotational motion; gears only wiggled and the measured rotation rate decreased. If the input rate was again increased from 0.2 to 0.3 rpps from 50 to 60 ps, the gears resumed rotation and the measured rate also increased. However, increasing temperature (~2000K) forced the gears to return to the wiggling state with the measured rate decreasing. At this high temperature, continuing to increase the input rate failed to rotate gears.

Gears centainly cannot work at high temperature. The critical temperature is about 600 to 1000 K, as estimated from the current study. Gears cannot work well beyond this temperature. Note that no bond or tooth breaking occurs up to at least 3000K.

An interesting observation is that the input rate is not equal to the measured rate with hot end conditions. When the end atoms of a nanotube are given an angular velocity, strain and stress are induced between them and neighboring atoms. These atoms must move to release the strain. In the cold end conditions, end atoms are not allowed to move back; the neighboring atoms have to move forward and therefore input rate should equal the measured rate, which will be illustrated in the following sections. In contrast, hot end atoms can move back as neighboring atoms go forward and input rate in this case is always larger than the measured rate, as shown in Fig. 4. In either case, we have found that the critical temperature of 600-1000K for gear operation is similar.

Isothermal Rotation Dynamics of Gears in Vacuum

It is common sense to maintain constant temperature for gears to work. In MD simulations, constant temperature is often obtained by an artificial thermostat which controls temperature by a heat transfer equation; not by a real cooling medium. Such a model system can provide information on isothermal dynamics in a constant temperature system without any coolant-gear molecular interactions. Fig. 5 shows the isothermal rotation dynamics of the gear system in Fig. 3 (see Gear Rotation at Room Tempearure).


Fig. 4. Left: rotation rate vs. time at 300K; green line - input, red line - measured for powered gear, blue line - measured for driven gear. Right: intragear (top) and intergear (bottom) energy vs. time at 300K.

In the first 120 ps, the measured rotation rate of the two gears increases with increased input rate and the averaged values for the two gears are basically identical. The gears at constant room tempeature work well until the measured rate is about 0.1 rpps (input rate of 0.4 rpps). This critical rotation rate was also found for cold end gears. Beyond this rate, slip occurs as the rotation rate continues increasing or stays at a higher value for the powered gear and the rotaion rate of the driven gear decreases. When the gears slip, intergear energy and bonded internal energy jump to a higher value. Obviously, this jump does not signify bond breaking or tooth breaking because the energy change is small (see Teeth Slip for visual evidence). Therefore, the gears should resume working if the input rate is reduced. It can be seen from Fig. 4 that the measured rotation rate and energies return to reasonable values when the input rotation rate decreases. A very interesting case can be made from the energy curve in Fig. 4. When the gears are not rotating, they have a pronounced breathing mode and are quite flexible. However, as the rotation rate increases centrifugal force stiffens the gears and the energy decreases. When gears fail they slip rather than fragment (i.e., no bonds brake). When the conditions that led to failure are removed, intermolecular forces will cause the gear teeth to straight out and mesh properly, and the gears go back to a low energy state and start working again. This offers an operational advantage. A trial and error procedure can be used to establish operation conditions for physical gears without needing to worry about destroying them.

The slip can be better understood from the animation Teeth Slip. When the rotation rate approaches the critical value of 0.1 rpps, the benzyne molecular teeth start tilting. This tilting allows the gear teeth to slip at expense of increasing both intergear and intragear energy. A rough estimation is that tilting 20° will induce slip but the gear still can work when tilting is up to about 10°. Relative to the energy of a stable tooth configuration, the tilting energy of 10 and 20° is 1.4 and 5.6 kcal/mol, respectively [Jaffe 96a]. These two values are represented by two dotted lines plotted in Fig. 5. Rotational kinetic energy of gear teeth is a function of the diameter of gear and rotation rate, as shown by a curve in Fig. 5. If the rotational kinetic energy is greater than tilting energy at 20°, major tilting and slip occur. If the kinetic energy is less than tilting energy of 10°, gears will rotate steadily and safely. Thus, Fig. 5 is divided into red, yellow and green zones by these two tilting energy values. Operation in red zone is prohibited -- rotation rate is larger than 0.15 rpps and tilting is larger than 20°. Operation in the yellow zone can work but it is not as reliable as in the green zone.


Fig. 5: Energy vs. angular velcocity of gear teeth

The operation curve in Fig. 5 has been supported by MD runs for the gear systems using short [14,0] nanotubes (see data). We also did MD runs for longer tubes (about twice longer) and the critical rotation rate of 0.1 rpps was found again although it took more input energy and time to reach this value. The 0.1 value also holds for cold end gears.

We tested several force fields for gear simulations and some results are shown in Table 1. Slip occurs because the molecular teeth tilt. To make sure that no reactive slip occurs, we did comparative MD runs for two cases: with and without Brenner's reactive potential for intergear interactions. No significant difference was observed for slip condition and energy values.

Table 1: Comparion for several force fields used in gear simulation
intragear energy, ev/atom intergear energy, 1000ev/atom angular velocity
potential before slip after slip potential before slip after slip rpps at slip
Brenner -6.688± 0.006 -6.678± 0.010 12+6(L-J) -1.000± 0.012 -0.525± 0.035 0.1~0.12 (MPEG)
Brenner -6.689± 0.005 -6.676± 0.012 (L-J)+Brenner -1.010± 0.010 -0.517± 0.038 0.1~0.12 (MPEG)
Brenner -6.688± 0.006 -6.680± 0.012 exp+6+columbic -0.988± 0.016 -0.510± 0.045 0.1~0.12 (MPEG)

Electrostatic interactions also need to be taken into account. When two benzyne teeth come close, they try to maintain a displaced parallel configuration, even when slipping. This is similar to the favorable interactions observed for benzene dimers [Jaffe 96b]. It was found that the Buckingham (exp+6) force field plus electrostatic interaction terms was better at predicting the configuration and energy compared to 6-12 Lennard-Jones potential without the charge term. Therefore, we tested this case by placing partial charges on benzyne atoms. It turns out that these different force fields do not make significant differences in rotational dyanmics. This is perhaps because mechanical motion is not as sensitive to force fields as is local molecular configuration and conformation. As a matter of fact, most force fields for the same types of atoms predict almost identical structures and properties for molecular systems in condensed state with difference only in detailed local structures.

More Examples of Operating Gear Systems

We have drawn serveral useful conclusions from the above studies. If gear temperature was less than 1000K, a trial and error procedure could be used to determine gear operation conditions without fear of destroying the gears. Furthermore, if tilting energy at several angles, say, 10° and 20°, was properly estimated and rotation rate was chosen so that rotation energy was less than the tilting energy, gear systems should work well without any slip. The operation would be easier if powered gears were driven by cold end atoms since input rate was the same as rotation rate of teeth of powered gears. Following these points, we simulated operations of other types of nanotube based gear systems.

Multiple Teeth Gears. Two types of gears with multiple rows of 1,2 teeth, shown in Fig. 6, have identical nanotubes [14,0] to the gears previous studied. We call the left system the on-line tooth gears and the right one the off-line tooth gears. Operation curves with hot end conditions at room temperature are also shown in Fig. 6. The critical slip rate of 0.1 rpps was observed again. In addition, the ratio of input to measured rate was also the same as that of single row teeth. As expected, operation of the off-line multiple tooth gears, as indication by the measured rotation rate, is smoother than on-line multiple tooth gears and single row tooth gears previous discussed. As can be seen from Rotation of Multiple Teeth Gears, this is because gear teeth sometimes do not mesh properly and will occasionally exert counter-rotational forces on each other. In proper working conditions, the teeth will interface face to face.

However, sometimes -- particularly in the multiple rows of in-line teeth case -- the teeth will interface in a T configuration.

In this case, the vertical part of the T will exert a counter-rotational force on the tooth representing the horizontal portion of the T and the gears will tend to chatter.


Fig. 6: Left: on-line tooth gears; Right: off-line tooth gears. Bottom: the rotation rate vs. time; green - input, red - measured for powered gear, white - measured for driven gear

Gear and Shaft. This system is shown in Fig. 7. The carbon nanotube is still [14,0] for the gear, but [9,9] for the shaft with diameter of 11 and 12.2 Å, respectively. Two types of operations were performed in hot end conditions. One was powering the gear to drive the shaft, converting rotational motion into translational motion. The other was converting translation of the shaft into rotation of the gear. In the latter case, a constant linear velocity was given the atoms at one end of the shaft. Operation curves obtained from MD runs are also shown in Fig. 7 with the angular velocity of the gear converted into linear velocity in Å/ps. We can see that the gear-shaft system works well in either case. However, it takes more input energy to convert these two types of mechanical motions compared to the case of one gear driving another gear. The ratio of input rate to measured rate is about 5 for the shaft driving the gear, and around 11 for the gear driving the shaft. Since the mass of the shaft is almost twice that of the gear, it takes more power for the gear to drive the shaft (see Operating Gear-Shaft).

Fig. 7: Gear-shaft. Plots: rotation rate vs. time (left: shaft drives gear; right: gear drives shaft). The lines: green - input, red - measured for powered gear, white - measured for driven gear

Small and Large Gears.This system is shown in Fig. 8. The nanotube is [18,0] for large gear and [10,0] for small gear. The ratio in diameter and number of atoms or mass is 1.8 with the smaller diameter being about 8 Å. Our simulations showed that this system could work and similar operation curves to the previous ones were obtained. Since the tube dimeters in this system are different from those previously studied, the critical slip conditions and the ratio of rotation rates are not the same as before. Operation of the large gear driving the small one is easier and smoother than the small driving the large becasue of the difference in mass. If the small gear is given a large acceleration, it does not drive the large one and instead bounces back and forth several times, like elastic collisions of a small ball between two boards (see Rotation of Small-Large Gears).


Fig. 8: Small and large gear system.

Rotation of Gears in a Gas

Success in operating nanotube based gears so far was based on control of temperature, which was achieved by a software thermostat in vacuum. To improve realism, we used a coolant gas instead of the thermostat. A new problem is that the gas will resist rotation. The higher the kinetic energy of the gas, the faster the cooling and the more drag, when the gas temperature is much lower than the gear tepearture. Therefore, the conditions to get both faster cooling and less drag seem in conflict.

One gas-gear simulation system is shown in Fig. 9. The gears are placed in the center of a box of 2000 gas atoms. The dimensions of the box can be adjusted to change gas pressure or gas density (in this example, it is 120x80x60Å). The gas atom type also can be changed from the input. No artificial thermostat is used for the gears. The heat of the gears is removed by the gas, whose temperature is controlled by a software thermostat.

Fig. 9. Gas-gear system. The right is a local part of the left.

Fig. 10 compares operations of the gears in gaseous Ne at 200K and 0.25 atm. with gears in a vacuum. The initial temperature of the gears is 150K. In both cases, the rotation rate is almost the same for the powered gears and the input since the end atoms in the powered gears are in cold end conditions. Angular velocity increases linearly from 0 to 0.05 rpps and then is constant. It can be seen by comparing the rotation rate of secondary gears that the operation of the gears after 100 ps is much better in the gas than in the vacuum. The fluctuation of the measured rate of the second gear around that of first gear is very small for the gas-gear sytem but it is very large for the gear-vacuum system. Obviously, the gears work much better with gas coolant than in vacuum because the role of the gas in cooling gears. The gear temperature keeps increasing in vacuum, but is controlled to some extent by gas, as shown in Fig. 10. To gain confidence, more and longer MD runs are needed. This preliminary work, neverthelss, has demonstated the possibilities of cooling the gears and making them work.


Fig. 10: Top: rotation rate vs. time; input - green, measured for powered gears - red, measured for driven gears - white (gear/gas) and blue (gear/vacuum). Bottom: temperature vs. time; red - gear/vacuum, green - gear/gas

Conclusions

This present work has computationally suggested that nanotube based gears can be made and operated. The MD simulations used the Brenner's potential which has been checked by quantum chemistry calculation results of nanotube model molecules.

In addition, some information useful for future work can be extracted. Such as

The design space of all potential gears is quite large. This space can be at least partially parameterize by:

Furthermore, the operating characteristics of the gears appears to change throughout this space. We have examined a few points in this design space and related slip conditions to input energy and tooth tilting energy. To design and build complex machines will require characterizing some substantial portion of this multi-dimensional design space.

To companion papers.

References.


NAS Author: Jie Han